BIOINFORMATIC PREDICTION OF CORONAVIRUS (SARS-COV-2) MUTATIONS THAT INCREASE CONTAGIOUSNESS
Inhibitory effects of the secondary metabolite of actinomycete were examined on cell cycle of the yeasts of S. pombe and S. cerevisiae. The secondary metabolite was obtained from cultivation of the actinomycete isolated from the soil of Owakudani in Hakone, Japan. The fifth fraction of the secondary metabolite by ODS column separation (HK-T5), which was soluble to pure methanol, was used in the present experiments. The HK-T5 brought about the delay of forming colonies of S. pombe for about 11 days compared to that cultivated without the HK-T5. The delay of the colony formation was longer for the S. pombe cultivated with more amount of the HK-T5. The cultivation with HK-T5 also brought about the extension of the lifespan of the S. pombe for more than 10 weeks in a liquidus medium. The cell life recovered the ordinary manner by removal of the HK-T5, meaning that the activities of the HK-T5 is reversible. These facts confirm the suppression of cell cycle, and the delay of cell growth by the HK-T5. These phenomena were similarly observed for S. cerevisiae. Comparison of the action of HK-T5 with hydroxyurea, which is an anticancer drug inhibiting the cell cycle at S phase, clarified that the inhibitory action of HK-T5 worked at the phase earlier than S phase. The combined effects of HK-T5 on the cell cycle were evaluated with triamcinolone acetonide (TA), or aspirin, the former of which is a drug synchronizing cancer cells in S phase, and the latter keeping human cells in G1/G0 phases. The combined use of HK-T5 with TA synchronized the cells at the phase slightly proceeding from G1 to S phase without toxicity. On the other hand, the combined use with aspirin made the inhibitory effect of HK-T5 inactive. Hence, the HK-T5 is attractive as a drug for the extension of cell lifespan, and anticancer therapy.
Cross-lingual Information Retrieval
In this project, we evaluate the effectiveness of Random Shuffling in the Cross Lingual Information Retrieval (CLIR) process. We extended the monolingual Word2Vec model to a multilingual one via the random shuffling process. We then evaluate the cross-lingual word embeddings (CLE) in terms of retrieving parallel sentences, whereby the query sentence is in a source language and the parallel sentence is in some targeted language. Our experiments on three language pairs showed that models trained on a randomly shuffled dataset outperforms randomly initialized word embeddings substantially despite its simplicity. We also explored Smart Shuffling, a more sophisticated CLIR technique which makes use of word alignment and bilingual dictionaries to guide the shuffling process, making preliminary comparisons between the two. Due to the complexity of the implementation and unavailability of open source codes, we defer experimental comparisons to future work.
Development of an autonomous Search and Rescue Drone
The number of natural disasters has risen significantly in recent years, and with climate change there is no end in sight. Consequently, the demands on rescue forces around the world are increasing. For this reason, I asked myself what I can do to improve the work of rescue teams. Advances in artificial intelligence and drone technology enable new possibilities for problem solving. Based on the technological advances mentioned above, an autonomous Search and Rescue drone was developed as part of this project. The system assists rescue workers in searching for survivors of natural disasters or missing people. This paper also suggests a method for prioritizing survivors based on their vitality. The system was implemented using a commercial Parrot ANAFI drone and Python. The software was tested on a simulated drone. To simplify the development, the whole system was divided into the following subsystems: Navigation System, Search System and Mission Abort System. These subsystems were tested independently. The testing of solutions and new concepts were performed using smaller test programs on the simulated drone and finally on the physical drone. The Search and Rescue system was successfully developed. The person detection system can detect humans and distinguish them from the environment. Furthermore, based on the movements of a person, the system can distinguish whether the person is a rescuer or a victim. In addition, an area to be flown over can be defined. If something goes wrong during the mission, the mission can be aborted by the Mission Abort System. In the simulation, the predefined area can successfully be flown over. Unfortunately, controlling the physical drone does not work. It stops in the air after takeoff due to the firmware of the drone. It does not change the flight state of the drone, which results in all subsequent commands from the system being ignored. This paper shows that artificial intelligence and drone technologies can be combined to deliver better rescue services. The same system can be applied to other applications.
Development of an autonomous Search and Rescue Drone
The number of natural disasters has risen significantly in recent years, and with climate change there is no end in sight. Consequently, the demands on rescue forces around the world are increasing. For this reason, I asked myself what I can do to improve the work of rescue teams. Advances in artificial intelligence and drone technology enable new possibilities for problem solving. Based on the technological advances mentioned above, an autonomous Search and Rescue drone was developed as part of this project. The system assists rescue workers in searching for survivors of natural disasters or missing people. This paper also suggests a method for prioritizing survivors based on their vitality. The system was implemented using a commercial Parrot ANAFI drone and Python. The software was tested on a simulated drone. To simplify the development, the whole system was divided into the following subsystems: Navigation System, Search System and Mission Abort System. These subsystems were tested independently. The testing of solutions and new concepts were performed using smaller test programs on the simulated drone and finally on the physical drone. The Search and Rescue system was successfully developed. The person detection system can detect humans and distinguish them from the environment. Furthermore, based on the movements of a person, the system can distinguish whether the person is a rescuer or a victim. In addition, an area to be flown over can be defined. If something goes wrong during the mission, the mission can be aborted by the Mission Abort System. In the simulation, the predefined area can successfully be flown over. Unfortunately, controlling the physical drone does not work. It stops in the air after takeoff due to the firmware of the drone. It does not change the flight state of the drone, which results in all subsequent commands from the system being ignored. This paper shows that artificial intelligence and drone technologies can be combined to deliver better rescue services. The same system can be applied to other applications.
Development of an Android Application for Triage Prediction in Hospital Emergency Departments
Triage is the process by which nurses manage hospital emergency departments by assigning patients varying degrees of urgency. While triage algorithms such as the Emergency Severity Index (ESI) have been standardized worldwide, many of them are highly inconsistent, which could endanger the lives of thousands of patients. One way to improve on nurses’ accuracy is to use machine learning models (ML), which can learn from past data to make predictions. We tested six ML models: random forest, XGBoost, logistic regression, support vector machines, k-nearest neighbors, and multilayer perceptron. These models were tasked with predicting whether a patient would be admitted to the intensive care unit (ICU), another unit in the hospital, or be discharged. After training on data from more than 30,000 patients and testing using 10-fold cross-validation, we found that all six models outperformed ESI. Of the six, the random forest model achieved the highest average accuracy in predicting both ICU admission (81% vs. 69% using ESI; p<0.001) and hospitalization (75% vs. 57%; p<0.001). These models were then added to an Android application, which would accept patient data, predict their triage, and then add them to a priority-ordered waiting list. This approach may offer significant advantages over conventional triage: mainly, it has a higher accuracy than nurses and returns predictions instantaneously. It could also stand-in for triage nurses entirely in disasters, where medical personnel must deal with a large influx of patients in a short amount of time.