Investigation of the Role of Mammalian Siderophore 2,5-DHBA in Neurodegeneration
Lipocalin 2 (LCN2), a 25-kDa secreted protein that belongs to the lipocalin family, is known to bind to a class of bacterial Fe-binding molecules known as siderophores. Iron is essential for bacterial growth. To obtain iron from host cells, bacteria produce siderophores, such as Enterochelin (Ent), to bind and transport host iron into the bacterial cell. In response, the host produces LCN2 to bind the iron-laden enterochelin, forming the tricomplex, LCN2: Ent: Fe3+. This inhibits bacterial growth as iron has been sequestered by LCN2. Devireddy et.al. 2005, proposed the binding of the tricomplex, LCN2: Ent: Fe3+ with the LCN2 receptor (LCN2R). This resulted in the internalisation of the complex, releasing the bound iron into the cell. The increase of intracellular iron was reported to cause cell mortality. Recent publications postulated 2,5-dihydroxybenzoic acid (2,5-DHBA) to be an endogenous mammalian siderophore homologue in mouse in vivo and in vitro studies, which could sequester LCN2 and iron. High iron concentrations in the brain have been consistently observed in Alzheimer's disease and Parkinson's disease. Accumulation of intracellular iron is known to be toxic to neurons, resulting in neurodegeneration. Hence, this study aims to determine the role of 2,5-DHBA as the mammalian siderophore in a cell culture model of neurodegeneration. We hypothesise that addition of 2,5-DHBA to cells exposed to LCN2 will result in increased iron uptake into neuronal cells, reducing cell viability. SH-SY5Y (human neuroblastoma) cell line was used in our study. To determine if SH-SY5Y is a suitable cell line, endogenous levels of LCN2 and LCN2R mRNA and protein expression were determined using reverse transcription-polymerase chain reaction (RT-PCR) and Western Blot analysis respectively. Preliminary results showed presence of both the LCN2R mRNA and protein but absence of LCN2 mRNA. This could be due to the low expression of LCN2 when not exposed to stress. Hence, to simulate conditions of neurodegeneration (by inducing high expression of LCN2), SH-SY5Y was treated with Kainic Acid (KA). After KA, LCN2 mRNA and protein expression levels will be detected again. With the successful upregulation of LCN2 gene expression, SH-SY5Y will be treated with 2,5-DHBA with KA treatment to determine cell viability using the MTS cell proliferation assay. A decreased cell viability or increased expression of pro-apoptotic genes would support the function of 2,5-DHBA as a mammalian siderophore in the brain. Furthermore, KA treatment can also be applied to microglial or astrocyte cell lines, which are known to secrete high levels of LCN2 when treated with KA. Co-culturing these cells with SH-SY5Y can allow us to study the downstream effects of secreted LCN2 from glial cells binding to the LCN2R receptors on SH-SY5Y neuronal cells. This study will help to further understanding of the relationship between 2,5-DHBA and cellular iron transport. If 2,5-DHBA is able to bind LCN2 and iron to increase intracellular iron levels in the neuronal cells, the formation of the tricomplex, LCN2: 2,5-DHBA: Fe3+, could be targeted for therapeutic interventions in neurodegenerative diseases by reducing intracellular iron levels to help ameliorate the progression of neurodegenerative diseases.
Understanding the Modern Diagnoses of Protein C Deficiency "Pcd" with Unknown Gene Plays a Critical Role in the Inherited Thrombophilia
Protein C deficiency (PCD) is found in 1 out of 200 to 500 persons in the general global population which is also one of the common conditions of Inherited thrombophilia, it’s characterized by an increased tendency of blood to clot in human blood vessels. It is caused by several factors including mutations in the genes involved in thrombin binding, protein c activation and numerous clotting factors. This includes F5 (Factor 5 Leiden) gene on chromosome 1q24.2, F7 (Prothrombin) gene on chromosome 13q34, SERPINC1 (serpin peptidase inhibitor C) on chromosome 1q25.2, SERPIND1 (serpin peptidase inhibitor D) on chromosome 22q11.21, HRG (Histidine Rich Glycoprotein) on chromosome 3q27.3, PLAT (Plasminogen Activator) on chromosome 8q11.21 and THBD (Thrombomodulin) gene on chromosome 20p11.21. In the current study, a three Saudi families with inherited thrombophilia has been recruited to identify the underlying cause of this special condition. Whole exome sequencing, targeting all coding exons of the human genome, was performed using Illumina Nextera library preparation kits followed by paired-end sequencing on Illumina NextSeq500 instrument. Reads quality control was performed and reads were aligned to the reference genome using BWA software. Variants calling and annotation was performed using GATK. All known genes involved in causing inherited thrombophilia All known genes involved in causing PCD were excluded by whole exome sequencing. The genes that were previously reported to be involved in inherited thrombophilia were checked for any causative variant. No mutation has been identified in known genes. identifying a novel gene underlying PCD. The Result of this study will hopefully pave the way to better understanding the disease pathophysiology and help in developing DNA based diagnosis, carrier screening and somatic gene therapy.
A Novel Selection Process for the Conversion of Conventional Bacteria into Electrotrophs
The redox reactions of bacteria metabolism have been extrinsically studied. These mechanisms allow certain types of bacteria to be able to synthesize extremely valuable extracellular byproducts. Other types of bacteria are able to extract toxic metals from water by donating electrons directly to those aqueous metal ions, thus turning them into solid precipitates. However, the problem of these microorganisms is that their efficiency rates and production speeds are exceptionally low. This study focuses on the properties of electrotrophs, which are bacteria that can feed on pure electrons directly from an electrode (Rabaey et al 2010). Compared to normal organic-feeding bacteria, electrotrophs direct the majority of the electrons obtained to the production of metabolic byproducts (Nevin et al 2010). Therefore, when electrotrophs are employed in bioelectrochemical systems (BESs) their metabolic redox reaction efficiency rates are dramatically increased. This makes it possible to produce large quantities of valuable compounds such as hydrocarbons, plastics and medicine or efficiently remediating the environment (He et al 2016). Moreover, the usage of electricity as an energy source compared to conventional organic substrates is immensely cheaper (Rabaey et al 2010). However, not all bacteria are electrotrophs nor do all electrotrophs have favourable metabolic traits. Thus, there is a need for a novel procedure to turn conventional bacteria into electrotrophs which is a crucial step to making the BES an aggressive competitor in the sustainable energy industry.
The Locus of Mid-Tangent Points of Planar Curves
In this project, we defined a mid-tangent point with respect to a fixed point X and a tangent at a point Y on a planar curve C as a point on the tangent that is equidistant from X and Y. We studied the locus of mid-tangent points of conic sections. We found that the locus of mid-tangent points of most conic sections are non-linear curves. However, we observed and proved by using Euclidean geometry that the locus of mid-tangent points of circles are straight lines. The mapping defined by mid-tangent points was studied further. The similarity between a mid-tangent mapping and a stereographic projection was displayed as a one – to – one correspondence function. We also extended the concept of mid-tangent points to three dimensional space and found that the similarity with the stereographic projection was retained in higher dimensions. Finally, we studied the locus of mid-tangent points of a sphere to create a mapping of the sphere to a plane.