DEVELOPMENT OF PAPER-BASED ORIGAMI BIOSENSOR PLATFORMS FOR COLORIMETRIC DETECTION OF BIOCONTAMINANTS
Infectious diseases caused by bacteria from biological pollutants pose a great burden in terms of diagnosis and treatment, and millions of people worldwide die from bacterial infections. Detection of bacteria plays a critical role in clinical diagnosis and control of contamination, but is not accessible due to the high cost, complex devices and equipment required. In the project, an alternative to existing methods, a paper-based biosensor for the detection of model organism E. coli bacteria, which is visible, low cost, easy to use, can be integrated with a smartphone, is based on rapid color change in the exposed environments, drinking and pool water, wastewater, beverage products. platforms were developed. For the specific detection of E.coli bacteria, two different biosensors have been developed that can perform colorimetric detection in a user-friendly origami design, minimizing microchip and processing steps based on antibody-bound PVDF membrane and filter paper-based immunological method. In the presence and absence of target bacteria E.coli, the lowest detection limit of the biosensors obtained by using paper-based platforms that create a distinctive color on them, depending on the concentration, was 0.9x103 bacteria/ml for origami biosensor, 2.7x103 bacteria/ml for microchip biosensor and the widest dynamic linear operating range was calculated as 103-107 bacteria/ml. With the biosensor platforms we have developed, the use of only one smartphone for both qualitative and quantitative, visible results and analysis within minutes constitutes the originality of our project. With these promising results, the biosensors we have developed can also be used for the detection of different biological pollutants, do not contain complex devices and can be easily produced in large scales. We believe that the biosensors we have developed for the detection of biological pollutants in water and beverages, especially in regions where test laboratory infrastructure is not available, will contribute to the literature, public health, health economy and sustainable development goals such as clean water and sanitation, health and quality life, and life in water.
Adversarial Attacks Against Detecting Bot Generated Text
With the introduction of the transformer architecture by Vaswani et al. (2017), contemporary Text Generation Models (TGMs) have shown incredible capabilities in generating neural text that, for humans, is nearly indistinguishable from human text (Radford et al., 2019; Zellers et al., 2019; Keskar et al., 2019). Although TGMs have many potential positive uses in writing, entertainment and software development (Solaiman et al., 2019), there is also a significant threat of these models being misused by malicious actors to generate fake news (Uchendu et al., 2020; Zellers et al., 2019), fake product reviews (Adelani et al., 2020), or extremist content (McGuffie & Newhouse, 2020). TGMs like GPT-2 generate text based on a given prompt, which limits the degree of control over the topic and sentiment of the neural text (Radford et al., 2019). However, other TGMs like GROVER and CTRL allow for greater control of the content and style of generated text, which increases its potential for misuse by malicious actors (Zellers et al., 2019; Keskar et al., 2019). Additionally, many state-of-the-art pre-trained TGMs are available freely online and can be deployed by low-skilled individuals with minimal resources (Solaiman et al., 2019). There is therefore an immediate and substantial need to develop methods that can detect misuse of TGMs on vulnerable platforms like social media or e-commerce websites. Several methods have been explored in detecting neural text. Gehrmann et al. (2019) developed the GLTR tool which highlights distributional differences in GPT-2 generated text and human text, and assists humans in identifying a piece of neural text. The other approach is to formulate the problem as a classification task to distinguish between neural text and human text and train a classifier model (henceforth a ‘detector’). Simple linear classifiers on TF-IDF vectors or topology of attention maps have also achieved moderate performance (Solaiman et al., 2019; Kushnareva et al., 2021). Zellers et al. (2019) propose a detector of GROVER generated text based on a linear classifier on top of the GROVER model and argue that the best TGMs are also the best detectors. However, later results by Uchendu et al. (2020) and Solaiman et al. (2019) show that this claim does not hold true for all TGMs. Consistent through most research thus far is that fine-tuning the BERT or RoBERTa language model for the detection task achieves state-of-the-art performance (Radford et al., 2019; Uchendu et al., 2020; Adelani et al., 2020; Fagni et al., 2021). I will therefore be focussing on attacks against a fine-tuned RoBERTa model. Although extensive research has been conducted on detecting generated text, there is a significant lack of research in adversarial attacks against such detectors (Jawahar et al., 2020). However, the present research that does exist preliminarily suggests that neural text detectors are not robust, meaning that the output can change drastically even for small changes in the text input and thus that these detectors are vulnerable to adversarial attacks (Wolff, 2020). In this paper, I extend on Wolff’s (2020) work on adversarial attacks on neural text detectors by proposing a series of attacks designed to counter detectors as well as an algorithm to optimally select for these attacks without compromising on the fluency of generated text. I do this with reference to a fine-tuned RoBERTa detector and on two datasets: (1) the GPT-2 WebText dataset (Radford et al., 2019) and (2) the Tweepfake dataset (Fagni et al., 2021). Additionally, I experiment with possible defences against these attacks, including (1) using count-based features, (2) stylometric features and (3) adversarial training.
The effects of Different Synthesis Methods and Catalysts on Crude Aspirin
Aspirin is one of the most used and well-known medicines world-wide. It can be synthesized by reacting acetic anhydride and salicylic acid in a warm temperature of around 60-80°C. This reaction is usually catalyzed by sulfuric or phosphoric acid. This paper will investigate alternative catalysts, safer and more environmentally friendly, as well as compare different synthesis methods with different heat mediums, one using a water bath and the other amicrowave. By doing so, the effects of the catalyst and the method of synthesis on the yield, purity and environmental consequence of crude aspirin synthesis will be deduced. The targeted utcome is to find the alternative method as more energy efficient, and to find a greener safer catalyst to sulfuric and phosphoric acid. Further background information, exploration, and explanation is in the appendix. The targeted outcome will be to find a viable alternative catalyst that is safer and more environmentally friendly, and to find that the microwave synthesis method consumes less energy.
Face Pose Estimation using ResNet50 in the Metaverse
Face pose estimation has many possible applications, ranging from driver attention measurement systems to applications in the metaverse, which this project will be focused on. Rather than using a more traditional landmark-to-pose method where the head pose is estimated via keypoints, our method trains a simple convolutional neural network, using the dataset 300W_LP, where the images are simply inputted into the network. The model is fitted with three fully connected layers that are linked to the each of the three Euler angles (yaw, pitch, and roll), alongside multiple loss functions, which improve the robustness of the network.
Synthesis of Substituted Pyrrolidin-2-ones and Isoindolines from Donor-Acceptor Cyclopropanes and Anilines/Benzylamines
The development of rapid and efficient synthetic approaches to the bioactive cyclic and polycyclic azaheterocycles is one of the most important challenges in organic synthesis. In this work effective and simple synthetic approaches to polysubstituted pyrrolidin-2-ones 2 and isoindolines 3 from donor-acceptor cyclopropanes 1, bearing the ester group as the one of acceptor substituents, and amines were developed. The γ- pyrrolidone based skeletons and isoindoline ring system is a constituent of many biologically active molecules, both natural and synthetic, and a key component of clinically relevant entities (Fig.1,2) [1,2]. The synthesis of pyrrolidin-2-ones 2 includes Lewis acid-catalyzed opening of the donor-acceptor cyclopropane with primary amines (anilines, benzylamines, etc.) to γ-amino esters, followed by in situ lactamization and dealkoxycarbonylation. The reaction has a broad scope of applicability; a variety of substituted anilines, benzylamines, and other primary amines as well as a wide diversity of donor-acceptor cyclopropanes bearing (hetero)aromatic or alkenyl donor groups and various acceptor substituents, can be involved in this transformation. In this process, donor-acceptor cyclopropanes react as 1,4-C,C-dielectrophiles, and amines as 1,1- dinucleophiles. The resulting di- and trisubstituted pyrrolidin-2-ones can be also used in subsequent chemistry to obtain various nitrogen-containing polycyclic compounds of interest to medicinal chemistry and pharmacology, such as benz[g]indolizidine derivatives. The synthesis of the substituted isoindolines 3 is based on the domino-reaction between donor-acceptor cyclopropanes, bearing in ortho-position of aromatic substituent a bromomethyl group, and different primary amines (e.g., anilines, benzylamines, cycloalkylamines) was developed. The reaction involves the generation of secondary amine followed by nucleophilic ring opening of cyclopropane with amino group. Moreover, this process provided a new practical method for the rapid synthesis of benzo[b]pyrrolizidinone 4 from readily available starting materials.
Analysis of lncRNA, miRNA , mRNA-associated ceRNA networks include in promoting glioma cancer
The ceRNAs as a class of RNAs act by competitively binding to miRNAs and limiting their regulatory effect on the target genes. Increasing evidences point to the role of ceRNAs in glioma cancer. So far, limited studies have been reported on the role of ceRNA in the development in glioma cancer. In this study, we have analyzed online RNA sequencing data in order to predict the ceRNAs which are putative regulators of in glioma cancer.
Reduction of traffic congestion in España Boulevard using graph theory
There have been numerous studies exploring the applications of graph theory in traffic management, often finding ways to reduce traffic congestion and make traveling more efficient. Such studies will be beneficial when applied to heavily congested areas such as España Boulevard, one of the busiest thoroughfares in Manila. This paper aimed tooptimize the road map of España Boulevard using graph theory. The current road map of España Boulevard was represented as a directed graphand subjected to the mutation method of edge removal, wherein an edge isremoved in each mutation based on a computed fitness function, F(G),which depicts better efficiency at lower values. Edges were removed until the graph got disconnected, which was tested using the Floyd-Warshall algorithm. The 28th mutation resulted in a minimum F(G) value of 144.4; this is a 50.18% decrease from the F(G) of the original graph, which is 290. After the 28th mutation, the removals resulted in an increase in the F(G). As a result, the final mutation resulted in an F(G) of 311.89, which characterized a less efficient graph. This study was able to apply graph theory concepts to optimize the España Boulevard road map using the mutation method, minimizing its F(G) by at most 50.18%. For future studies, the practicality of the alternate road map may be tested in simulations to examine its efficiency when other factors, such as traffic volume, are introduced.