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利用 CRISPR/Cas 技術重建複雜的DNA 修復機制

本研究利用合成生物學技術開發的創新基因組篩檢平台PRISM(v2.0),採用合成轉錄因子(crispr-TF)辨認DNA但不進行剪切,透過修改CRISPR/Cas的PAM-interacting (PI) domain序列打破其辨認限制,由原本NGG序列變成可以結合NAG的序列,提升crispr-TF在高通量基因組的篩選能力,期待未來可以做出辨認NNN序列,以此技術初步成功建構Chk2/Rad53所參與的基因網絡,讓失去Chk2/Rad53功能的酵母菌能在DNA損傷的情況生存。Chk2/Rad53蛋白磷酸酶在DNA修復的訊息傳遞中調控龐大的基因網絡,其中潛在大量不同調控路徑聯結的組合性,過去的研究都無法有效地分析且重建完整的DNA修復機制。未來將進一步探討Chk2/Rad53調控的下游基因組,並以此新技術和研究應用於複雜腫瘤與老化疾病的預防及治療。

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A New Method For Microplastic Removal and Optical Measurement

Microplastics are tiny invisible plastic pieces that are piling up in the marine environment emerging as one of the many environmental issues which our planet is facing today. Researches for the removal of these particles are important because studies that have been made so far haven't come up with an effective solution. This project aimed to detect microplastics and remove them from aqueous environments with an effective and practical method then it was aimed to determine the removal amount of microplastics by optical measurements with the developed system. Firstly, the magnetic carbonanotubes (m-CNT) which is intended to hold onto the surfaces of microplastics was synthesized and added to the mixture of microplastics. Then the magnet within a glass tube was passed through the mixture and the sample was cleared of microplastics. A spectrometer was made to monitor this process and after its calibration, it was used to measure coffees with different concentrations. It has been shown that their concentrations can be determined by calculating the transmission values and Rayleigh scattering. In the end, it has shown that there are no micro or nano-sized plastic particles when removed with M-CNT, within the accountable range of the spectrometer that had been made. Hence the removal of the microplastics: an invisible threat for the environment has been studied by combining nanomaterials with unique surface properties in the removal process and an optical principle such as Rayleigh scattering, a new technique has been developed that can measure quickly, economically,

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Properties of possible counterexamples to the Seymour's Second Neighborhood Conjecture

The project is devoted to the study of the Seymour’s Second Neighborhood conjecture by determining the properties of possible counterexamples to it. This problem has remained unsolved for more than 30 years, although there is some progress in its solution. The vector of the research is aimed at the analysis of possible counterexamples to the conjecture with the subsequent finding of some of their characteristic values. In addition, attention is focused on the generalized Seymour’s conjecture for vertex-weighted graphs. Combinatorial research methods and graph theory methods were used in the project. The author determines the values ​​of densities and diameters of possible counterexamples, considers separately directed graphs of diameter 3. The conditions under which specific graphs cannot be counterexamples to the Seymour’s conjecture with the minimum number or vertices are defined. The relationship between the Seymour’s conjecture and vertex-weighted Seymour’s conjecture is explained. It is proved that if there exists at least one counterexample, then there exist counterexamples with an arbitrary diameter not less than 3. Under the same condition, the existence of counterexamples with a density both close to 0 and close to 1 is also proved. The equivalence of the above two conjectures is substantiated in detail. It can be concluded that if the Seymour’s Second Neighborhood Conjecture is true for a directed graph of diameter 3, then it is true for any digraph, so that problem will be solved. Moreover, if the conjecture is true, then vertex-weighted version of this conjecture is true too. That is why a digraph of diameter 3 needs further research.

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The Use of Brine Shrimp to Test for Water Pollutants

The use of brine shrimp nauplii to test for the overall toxicity of sediment samples is proposed. Brine shrimp nauplii were cultured with different concentrations of heavy metals, including chromium (III), copper (II), nickel, lead and zinc, and organic pollutants, including triclosan, oxybenzone, octinoxate and bisphenol A. The brine shrimp nauplii were observed under a dissection microscope to determine the death rate. Results showed that brine shrimp nauplii are more sensitive to copper, cadmium, bisphenol A and oxybenzone. The LC50 (24h) are 55.5, 24.9, 5.6 and 2.7 ppm respectively. Zinc is likely to have synergistic toxic effect with nickel or lead. The synergistic toxic effects of other heavy metals and organic pollutants should be confirmed with further investigations. Brine shrimp nauplii were treated with extracts from sediment samples collected from the oyster culture zone of the Deep Bay, namely Pak Nei, Sha Kiu Tsuen and Hang Hau Tsuen. The sediment samples were extracted with neutral sodium acetate to dissolve the exchangeable heavy metal ions and some organic pollutants. The death rate of brine shrimp nauplii treated with the sediment extract of Hang Hau Tsuen was similar to 1 ppm PBA. It was also about 10 to 20% higher than that of the other two sites (Pak Nei and Sha Kiu Tsuen). Since Hang Hau Tsuen is closer to the residential area and Lau Fau Shan Seafood Market than the other two sites, its sediment sample is likely to have a higher level of environmental pollutants. The results suggest that brine shrimp nauplii may be used as a biomarker to monitor the environmental changes in the overall level of pollutants in sediment samples.

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「氫」雲直上-影響氫氣火箭飛行的各項因子探討-Discuss the Factors Affecting the Flight of the Hydrogen Rockets

本實驗主要在研究各項因子對氫氣火箭的影響,我們查了許多影片和資料,發現許多氫氣火箭實驗都沒有記錄各項因子的數據及比較,在歷屆科展的火箭實驗中,將氫氣作為燃料的作品也寥寥無幾,所以決定嘗試這個題目作為本實驗的研究主題。 我們的研究使用電解製造氫氣與氧氣,進行燃料、造型實驗,並用電腦計算出飛行高度,希望能找出最佳飛行高度因子。我們發現各種因子的飛升高度與質量、質心、燃料與造型有很大的關聯。 希望能藉由這些實驗讓人們更認識氫氣火箭,也能藉由氫氣火箭的飛行實驗讓大家更認識、更熟悉火箭之中的科學原理,讓大家對科學更有興趣。

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Anti-bacterial Crab bio-bandages with Bio-dressings 2.0

Commercially available bandages such as hydrocolloid are neither biodegradable nor anti-bacterial. Chitin is known to be the second most naturally available polysaccharide which could be transformed to chitosan which is known to be anti-bacterial (Hasan, 2018) (Chao, 2019) and haemostatic (Okamoto, 2003) (Hu, 2018). Chitosan can be further converted to hydrogel which is bio-degradable and has good water absorbance. Anti-bacterial crab bio-bandages and crab bio-dressings should be bio-degradable as it took 42 days and a month for complete bio-degradation respectively, so they should be better than commercial bandages such as Nexcare Hydrocolloid as the disposal of anti-bacterial crab bio-bandages with bio-dressings would no longer pose burden to landfilling or threat to our environment. Anti-bacterial crab bio-bandages with bio-dressings are anti-bacterial with degree of deacetylation of DD% (measured using FTIR Spectrum II) 82.6% (due to the presence of chitosan) even without the application of other anti-bacterial agents and hence can provide complete protection of wounds from skin and soft tissues infections and haemostatic (due to the presence of chitosan). After testing and certification based on IS997:2004 and BS EN 13726-1, they should meet many requirements specified. Anti-bacterial crab bio-bandages should be eligible for marketing. Some results were as follows: 1.4 Anti-bacterial effect of crab hydrogels and roasted crab hydrogels Pure chitosan, crab chitosan, crab hydrogels and roasted crab hydrogels showed significant anti-bacterial effect. NO oral bacterial colonies were present in drinking water with crab hydrogels. Thus crab hydrogels could serve as effective anti-bacterial wound dressings. 1.6 Basing on IS997:2004 standard, the load per unit of area of anti-bacterial bio-bandages was 342g/m2 which met the minimum requirement of 36g/m2, the anti-bacterial bio-bandages had stronger tension strength (>20N both in dry and wet conditions) than commercial hydrocolloid. (2.7N dry 2.8N wet) which was comparable with that required (50-67N) and pH of about 7 which met the pH range of 4.5-8. 1.7 The FSA Free-Swell Absorbency of synthetic blood of crab hydrogel bio-dressings was 1.86g per 5cm x 5cm dressing which was much higher than that of commercial hydrocolloid (0.299g per 5cm x 5cm dressing) based on BS EN 13726-1.

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Development of an Audio Modulated Tesla Coil

Originally, the Tesla transformer was developed to transmit energy and messages wirelessly. But it did not prove itself for either of these applications, so today it is only used for research purposes. Over time, the Tesla transformer has evolved and improved. Today it is possible with Tesla transformers to generate powerful and highly precise controlled discharges. During operation, impressive high-voltage discharges occur at the transformer. A tesla transformer is basically a high voltage generator that achieves a voltage boost by using two magnetically coupled LC series resonant circuits of the same resonant frequency. The Dual Resonant Solid State Tesla Coil (DRSSTC) built in this work has a high power IGBT half bridge module to excite the primary resonant circuit at the resonant frequency. The IGBTs are driven in such a way that audible pressure waves, and therefore music, are generated by the electrical discharges at the high voltage electrode. Within the scope of this work were the following two questions: - How is a DRSSTC designed and built? The DRSSTC system realized in this work is about 80 cm high and reaches about one-meter-long discharges. The design, development, and construction of the transformer are documented in detail and extensively in this thesis. - How does one measure an electrical voltage of 200,000 V, which changes sign more than 100,000 times per second? Two approaches have been taken to measure the voltages. Derived from the energy balance of an ideal capacitor and an ideal coil, a secondary voltage of about 200 kV was calculated via secondary current measurement. The second approach uses a voltage measurement via an in-house developed measuring electrode and a calculated divider ratio between the measured voltage and the secondary voltage. A relatively unrealistic secondary voltage of about 750 kV was measured since the divider ratio depends on approximate values. Nevertheless, the measuring electrode can be used for investigations of the voltage curve, or the divider ratio can be calibrated via the secondary current measurement. The development of such a transformer laid the foundation for much further research and scientific analysis.

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A Person Re-identification based Misidentification-proof Person Following Service Robot

Two years ago, I attended a robot contest, in which one of the missions required the robot to follow the pedestrian to complete the task. At that time, I used their demo program to complete the task. Not long after, I found two main issues: 1. The program follows the closest point read by the depth camera, which if I walk close to a wall next to, the robot may likely ‘follow’ the wall. 2. Not to mention if another pedestrian crosses between the robot and the target. Regarding these two issues, I decided to improve it. We’ve designed a procedure of using YOLO Object Detection and Person re-identification to re-identify the target for continuous following.

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Development of an Audio Modulated Tesla Coil

Originally, the Tesla transformer was developed to transmit energy and messages wirelessly. But it did not prove itself for either of these applications, so today it is only used for research purposes. Over time, the Tesla transformer has evolved and improved. Today it is possible with Tesla transformers to generate powerful and highly precise controlled discharges. During operation, impressive high-voltage discharges occur at the transformer. A tesla transformer is basically a high voltage generator that achieves a voltage boost by using two magnetically coupled LC series resonant circuits of the same resonant frequency. The Dual Resonant Solid State Tesla Coil (DRSSTC) built in this work has a high power IGBT half bridge module to excite the primary resonant circuit at the resonant frequency. The IGBTs are driven in such a way that audible pressure waves, and therefore music, are generated by the electrical discharges at the high voltage electrode. Within the scope of this work were the following two questions: - How is a DRSSTC designed and built? The DRSSTC system realized in this work is about 80 cm high and reaches about one-meter-long discharges. The design, development, and construction of the transformer are documented in detail and extensively in this thesis. - How does one measure an electrical voltage of 200,000 V, which changes sign more than 100,000 times per second? Two approaches have been taken to measure the voltages. Derived from the energy balance of an ideal capacitor and an ideal coil, a secondary voltage of about 200 kV was calculated via secondary current measurement. The second approach uses a voltage measurement via an in-house developed measuring electrode and a calculated divider ratio between the measured voltage and the secondary voltage. A relatively unrealistic secondary voltage of about 750 kV was measured since the divider ratio depends on approximate values. Nevertheless, the measuring electrode can be used for investigations of the voltage curve, or the divider ratio can be calibrated via the secondary current measurement. The development of such a transformer laid the foundation for much further research and scientific analysis.

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腦波辨識特徵提取於即時身分認證的研究

本研究的腦波辨識基於特徵提取,可應用於身分認證,具有不能被仿冒的優點。我們用低成本高便利性的腦波儀,自行撰寫程式讀取原始腦波,建立一致性的實驗程序。首先用腦波專心度的高低來控制智能車,再用腦波來測謊,有隱藏說謊行為時會觸發高電位腦波,在兩項前期研究後發現可用腦波特徵進行身分認證。三位受測者於不同日期提取10份腦波,每份腦波紀錄5120筆數據。接著我們反覆嘗試組合數十種統計函數進行特徵提取,找到兩項最佳特徵,達成將大量凌亂腦波資料降低維度又具有辨識力。我們腦波辨識分類方法使用近鄰演算法,測試程序用盲測交叉驗證法,辨識正確率百分百。最後我們用Arduino板來展示腦波辨識應用於腦波身分認證,資料庫中只要儲存每位受測者的腦波特徵值,就能在數秒內正確辨識說出受測者身分,顯示每個人腦波是不同的,而且能用特徵將其分辨出來。

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Solving Mathematical and Chemical Equations using Python

Max Gold's project, titled “Solving Mathematical and Chemical Equations using Python”, is a website comprising of 4 main programmes: one to find the smallest possible combination of two chemical compounds or elements; a self-made parsing function to convert a chemical equation into a matrix, then using Gaussian-Jordan elimination to find coefficients for an equation; a programme to parse a mathematical expression and use that parsed expression in algebraic division of an algebraic dividend of nth degree polynomial by a divisor of 1st degree polynomial; finally, a programme to solve binomial equations for the power s∈Q. This website was originally made so that Max Gold could improve his programming skills for GCSE computer science but expanded to incorporate his passion for chemistry and maths and thus allow others to use these programmes to help them with their problems as well. A problem with many conventional calculator websites is their lack of specificity – they tend to be able to compute some functions but not all. These programmes are tailored to GCSE and A level maths and chemistry, meaning this website provides an outlet to compute specific topics of problems.

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The Reproduction success of the Cyprinidae and a Claridae fish species and its impact on small- scale fisheries

To investigate the reproduction success and natural recruitment of several Cyprinidae fish and Claridae fish species in the Allemanskraal Dam. The purpose of the project included investigating whether each individual fish species studied has a successful 2020/2021 spawning season in comparison with each other. Sections of the seine net were measured along with a distance of 10 along the shoreline. The ends of the seine nets were attached to one foot and the top of the net was held by hand. Both volunteers moved in unison while covering the 10m. The volunteer in the “deep end” moved towards the shoreline creating a semi-circle while the other volunteer remained stationary. The two ends of the net were then pulled onto the shore and the fish were collected. The results found that the Labeo Umbratus and Cyprinus carpio had the most successful spawning seasons with the highest recorded numbers. These high numbers of the Labeo Umbratus can be due to the fact that the species lays a large number of eggs. The high numbers of the Cyprinus carpio is due to the lower numbers of the other fish species as previous studies have shown that the species negatively impacts the environment which could in turn negatively impact the other fish species. The Claridae gariepinus and Labeobarbus aeneusas were the lowest. The low numbers of the Labeobarbus aneusas may be due to their slow growth and late maturity rate. The Labeo capensis had an average number relative to the other species and this is due to the fact that during the sampling period the dam was at 100% capacity as this is essential for the survival of the juvenile fish. The hypothesis was accepted as the Labeo Umbratus, Cyprinus carpio and Labeo capensis all have a successful spawning season. However, due to the size of the Cyprinus carpio, they would be most suited for a small scale fishery.

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